perses.rjmc.topology\_proposal.SmallMoleculeAtomMapper
======================================================

.. currentmodule:: perses.rjmc.topology_proposal

.. autoclass:: SmallMoleculeAtomMapper

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~SmallMoleculeAtomMapper.__init__
      ~SmallMoleculeAtomMapper.from_json
      ~SmallMoleculeAtomMapper.generate_and_check_proposal_matrix
      ~SmallMoleculeAtomMapper.get_atom_maps
      ~SmallMoleculeAtomMapper.get_oemol_from_smiles
      ~SmallMoleculeAtomMapper.get_smiles_index
      ~SmallMoleculeAtomMapper.map_all_molecules
      ~SmallMoleculeAtomMapper.molecule_library_from_string
      ~SmallMoleculeAtomMapper.molecule_library_to_string
      ~SmallMoleculeAtomMapper.to_json
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~SmallMoleculeAtomMapper.n_molecules
      ~SmallMoleculeAtomMapper.proposal_matrix
      ~SmallMoleculeAtomMapper.smiles_list