perses.annihilation.HybridTopologyFactory ========================================= .. currentmodule:: perses.annihilation .. autoclass:: HybridTopologyFactory .. automethod:: __init__ .. rubric:: Methods .. autosummary:: ~HybridTopologyFactory.__init__ ~HybridTopologyFactory.handle_harmonic_angles ~HybridTopologyFactory.handle_harmonic_bonds ~HybridTopologyFactory.handle_nonbonded ~HybridTopologyFactory.handle_periodic_torsion_force ~HybridTopologyFactory.new_positions ~HybridTopologyFactory.old_positions .. rubric:: Attributes .. autosummary:: ~HybridTopologyFactory.hybrid_positions ~HybridTopologyFactory.hybrid_system ~HybridTopologyFactory.hybrid_topology ~HybridTopologyFactory.new_to_hybrid_atom_map ~HybridTopologyFactory.old_to_hybrid_atom_map ~HybridTopologyFactory.omm_hybrid_topology