Index
_
|
B
|
F
|
G
|
M
|
N
|
P
|
S
|
T
_
__init__() (perses.bias.BiasEngine method)
(perses.bias.MinimizedPotentialBias method)
(perses.rjmc.geometry.FFAllAngleGeometryEngine method)
(perses.rjmc.geometry.GeometryEngine method)
(perses.rjmc.geometry.GeometrySystemGenerator method)
(perses.rjmc.topology_proposal.PeptideLibraryEngine method)
(perses.rjmc.topology_proposal.PointMutationEngine method)
(perses.rjmc.topology_proposal.PolymerProposalEngine method)
(perses.rjmc.topology_proposal.ProposalEngine method)
(perses.rjmc.topology_proposal.SmallMoleculeSetProposalEngine method)
(perses.rjmc.topology_proposal.TopologyProposal method)
(perses.storage.NetCDFStorage method)
B
BiasEngine (class in perses.bias)
F
FFAllAngleGeometryEngine (class in perses.rjmc.geometry)
G
GeometryEngine (class in perses.rjmc.geometry)
GeometrySystemGenerator (class in perses.rjmc.geometry)
M
MinimizedPotentialBias (class in perses.bias)
N
NetCDFStorage (class in perses.storage)
P
PeptideLibraryEngine (class in perses.rjmc.topology_proposal)
PointMutationEngine (class in perses.rjmc.topology_proposal)
PolymerProposalEngine (class in perses.rjmc.topology_proposal)
ProposalEngine (class in perses.rjmc.topology_proposal)
S
SmallMoleculeSetProposalEngine (class in perses.rjmc.topology_proposal)
T
TopologyProposal (class in perses.rjmc.topology_proposal)
perses
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine
Navigation
Contents:
Installation
Changelog
Alchemical transformations
Bias engine
Molecular geometry generation via RJMC
Sampler stack
Storage handling
Analysis
Related Topics
Documentation overview
Quick search